Thymidine Kinase 1 Data

Description

Human thymidine kinase 1 (i.e. cytosolic) data.

Usage

data(TK1)

Format

A data frame with the following columns.

R

The total concentration of TK1 enzyme.

d

The total concentration of dT (the nucleoside substrate).

X

The total concentration of ATP.

v

The velocity of the kinase reaction in 1/seconds.

fg

The figure number in the original paper.

year

The year of the original paper.

jrnl

The journal of the data source: PEP is Protein Expression and Purification, EJB is European Journal of Biochemistry, BBRC is Biochem Biophys Res Commun, JBC is Journal of Biological Chemistry.

vol

The volume number of the article.

page

The page number of the article.

frstAut

The first author of the article. This is a factor.

index

The articles indexed as 1 through 5.

Details

All concentrations are in micromolar. Here R stands for root (i.e. hub protein).

Source

The figure number, year, first author, journal, volume and page number are all included in the dataframe.

Examples

library(ccems)
data(TK1)
TK1[1:20,]
d=subset(TK1,year==2006,select=c(R,d,v))
plot(d$d,d$v,xlab="Total [dT]", ylab="reaction velocity", main="Birringer et al. PEP 2006 Fig. 4a")