TK1                  package:ccems                  R Documentation

_T_h_y_m_i_d_i_n_e _K_i_n_a_s_e _1 _D_a_t_a

_D_e_s_c_r_i_p_t_i_o_n:

     Human thymidine kinase 1 (i.e. cytosolic) data.

_U_s_a_g_e:

     data(TK1)

_F_o_r_m_a_t:

     A data frame with the following columns.

     '_E' The total concentration of TK1 enzyme. 

     '_S' The total concentration of dT (the nucleoside substrate).

     '_X' The total concentration of ATP.

     '_v' The velocity of the kinase reaction in 1/seconds.

     '_f_g' The figure number in the original paper.

     '_y_e_a_r' The year of the original paper.

     '_j_r_n_l' The journal of the data source:  'PEP' is Protein
          Expression and Purification,  'EJB' is  European Journal of
          Biochemistry,  'BBRC' is Biochem Biophys Res Commun,  'JBC'
          is Journal of Biological Chemistry.

     '_v_o_l' The volume number of the article.

     '_p_a_g_e' The page number of the article.

     '_f_r_s_t_A_u_t' The first author of the article. This is a factor.  

     '_i_n_d_e_x' The articles indexed as 1 through 5.  

_D_e_t_a_i_l_s:

     All concentrations are in micromolar.  Here R stands for root
     (i.e. hub protein).

_S_o_u_r_c_e:

     The figure number, year, first author, journal, volume and page
     number are all included in the dataframe.

_E_x_a_m_p_l_e_s:

     library(ccems)
     TK1[1:20,]
     d=subset(TK1,year==2006,select=c(E,S,v))
     plot(d$S,d$v,xlab="Total [dT]", ylab="reaction velocity", 
              main="Birringer et al. PEP 2006 Fig. 4a")

